NEWS.md
findMarkerDiffExp()
, findMarkerTopTable()
and plotMarkerDiffExp()
, which are replaced by runFindMarker()
, getFindMarkerTopTable()
and plotFindMarkerHeatmap()
, respectivelyuseReducedDim
, detectThresh
arguments for find marker functionsgetUMAP()
and getTSNE()
, which are replaced by runUMAP()
and runTSNE()
, respectivelyrunQuickUMAP()
and runQuickTSNE()
functions which directly compute the proper embedding from raw counts matrices with a simplified argument setaggregateRow
and aggregateCol
to plotSCEHeatmap()
combineSCE()
which merges the new structure properly