Plot distribution of sample counts — plot_sample

Displays the proportion of counts for each mutation type across one or more samples.

Usage

plot_sample_counts(
  musica,
  sample_names,
  modality = "SBS96",
  text_size = 10,
  show_x_labels = TRUE,
  show_y_labels = TRUE,
  same_scale = TRUE,
  annotation = NULL,
  table_name = NULL
)

Arguments

musica: A musica object.
sample_names: Names of the samples to plot.
modality: Name of table used for plotting counts. Default "SBS96".
text_size: Size of axis text. Default 10.
show_x_labels: If TRUE, the labels for the mutation types on the x-axis will be shown. Default TRUE.
show_y_labels: If TRUE, the y-axis ticks and labels will be shown. Default TRUE.
same_scale: If TRUE, the scale of the y-axis for each sample will be the same. If FALSE, then the scale of the y-axis will be adjusted for each sample. Default TRUE.
annotation: Vector of annotations to be displayed in the top right corner of each sample. Vector length must be equivalent to the number of samples. Default NULL.
table_name: Use modality instead

Value

Generates a ggplot object

Examples

data(musica_sbs96)
plot_sample_counts(musica_sbs96,
  sample_names =
    sample_names(musica_sbs96)[1]
)