Restructure of the musica class to contain mutational signature discovery and prediction results, thus eliminating the need for the musica_result class.
Added new functionality to help determine the correct number of signatures to predict (k-value).
Musica objects can be created from variants or directly from count tables.
musicatk 1.14.1 (2024-07-13)
Removed deconstructSigs
musicatk 1.14.0 (2024-05-03)
Updated version number to match Bioconductor
Fixed some minor bugs and dependencies
musicatk 1.10.0 (2023-10-16)
Updated version number to match Bioconductor
musicatk 1.8.0 (2023-04-11)
Updated version number to match Bioconductor
musicatk 1.3.1 (2021-10-10)
Updated version number to match Bioconductor
musicatk 1.2.1 (2021-08-08)
Fixed bug in fonts for some plots
Added documentation site generated with pkgdown
Added Shiny UI for interactive analysis of mutational signatures
musicatk 1.2.0 (2021-08-08)
Generated new release for Bioconductor 3.13
musicatk 1.1.2 (2021-02-03)
Added new functionality for analysis including clustering sample exposures using a variety of methods (e.g. k-means), differential exposure using a variety of methods (e.g., Wilcoxon rank-sum, Kruskal Wallis, GLM), and heatmap creation. Fixed a bug causing incorrect counting of mutations during creation of indel tables.