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Retrieve sample names from a musica object

Source: R/class_musica.R
sample_names.Rd

Sample names were included in the sample column in the variant object passed to create_musica_from_variants, or in the colnames of the count table object passed to create_musica_from_counts. This returns a unique list of samples names in the order they are inside the musica object.

Usage

sample_names(object)

# S4 method for class 'musica'
sample_names(object)

Arguments

object

A musica object generated by the create_musica_from_variants or create_musica_from_counts function.

Value

A character vector of sample names

Examples

data(res)
sample_names(res)
#> [1] TCGA-56-7582-01A-11D-2042-08 TCGA-77-7335-01A-11D-2042-08
#> [3] TCGA-94-7557-01A-11D-2122-08 TCGA-97-7938-01A-11D-2167-08
#> [5] TCGA-EE-A3J5-06A-11D-A20D-08 TCGA-ER-A197-06A-32D-A197-08
#> [7] TCGA-ER-A19O-06A-11D-A197-08
#> 7 Levels: TCGA-56-7582-01A-11D-2042-08 ... TCGA-ER-A19O-06A-11D-A197-08