Retrieve umap list from a result_model, result_collection, or musica object

The umap dataframes for the model

Usage

umap(x, ...)

# S4 method for class 'musica'
umap(x, result, modality, model_id)

# S4 method for class 'result_collection'
umap(x, modality, model_id)

# S4 method for class 'result_model'
umap(x)

umap(x, ...) <- value

# S4 method for class 'musica,matrix'
umap(x, result, modality, model_id) <- value

# S4 method for class 'result_collection,matrix'
umap(x, modality, model_id) <- value

# S4 method for class 'result_model,matrix'
umap(x) <- value

Arguments

x

A musica, result_collection, or result_model object generated by a mutational discovery or prediction tool.

...

Other inputs

result

Name of result from result_list to assign the umap. Used when result is a musica object.

modality

Modality to assign the umap. Used when result is a musica or result_collection object.

model_id

Model identifier to assign the umap. Used when result is a musica or result_collection object.

value

A list of umap dataframes

Value

A list of umap dataframes

Examples

data(res)
umap(res, "result", "SBS96", "res")
#> <0 x 0 matrix>