Return sample from musica_variant object

Usage

subset_variants_by_samples(musica, sample_name)

Arguments

musica: A musica object.
sample_name: Sample name to subset by

Value

Returns sample data.frame subset to a single sample

Examples

data(musica)
subset_variants_by_samples(musica, "TCGA-94-7557-01A-11D-2122-08")
#>         chr     start       end    ref    alt                       sample
#>      <fctr>     <num>     <num> <char> <char>                       <fctr>
#>   1:   chr1  11020563  11020563      C      A TCGA-94-7557-01A-11D-2122-08
#>   2:   chr1  43430030  43430030      G      T TCGA-94-7557-01A-11D-2122-08
#>   3:   chr1  58682403  58682403      A      G TCGA-94-7557-01A-11D-2122-08
#>   4:   chr1 109508295 109508295      C      G TCGA-94-7557-01A-11D-2122-08
#>   5:   chr1 156384826 156384826      A      C TCGA-94-7557-01A-11D-2122-08
#>  ---                                                                      
#> 116:  chr19  54255365  54255365      G      A TCGA-94-7557-01A-11D-2122-08
#> 117:  chr20  49028576  49028576      C      T TCGA-94-7557-01A-11D-2122-08
#> 118:  chr21  25881519  25881519      C      G TCGA-94-7557-01A-11D-2122-08
#> 119:   chrX  12886189  12886189      A      G TCGA-94-7557-01A-11D-2122-08
#> 120:   chrX 153950810 153950810      C      T TCGA-94-7557-01A-11D-2122-08
#>      Variant_Type
#>            <char>
#>   1:          SBS
#>   2:          SBS
#>   3:          SBS
#>   4:          SBS
#>   5:          SBS
#>  ---             
#> 116:          SBS
#> 117:          SBS
#> 118:          SBS
#> 119:          SBS
#> 120:          SBS