Retrieve modality from a result_model, result_collection, or musica object

The modality

Usage

modality(x, ...)

# S4 method for class 'musica'
modality(x, result, modality, model_id)

# S4 method for class 'result_collection'
modality(x, modality, model_id)

# S4 method for class 'result_model'
modality(x)

modality(x, ...) <- value

# S4 method for class 'musica,matrix'
modality(x, result, modality, model_id) <- value

# S4 method for class 'result_collection,matrix'
modality(x, modality, model_id) <- value

# S4 method for class 'result_model,matrix'
modality(x) <- value

Arguments

x: A musica, result_collection, or result_model object generated by a mutational discovery or prediction tool.
...: Other inputs result_collection object.
result: Name of result from result_list to assign the modality. Used when result is a musica object.
modality: Modality to assign the modality. Used when result is a musica or result_collection object.
model_id: Model identifier to assign the modality. Used when result is a musica or
value: A modality

Value

The modality for the model

Examples

data(res)
modality(res, "result", "SBS96", "res")
#> [1] "SBS96"