A function to generate .html Rmarkdown report containing the
visualizations of the runDEAnalysis
function output
reportDiffExp(
inSCE,
study,
useReducedDim,
featureDisplay = NULL,
output_file = NULL,
output_dir = NULL
)
A SingleCellExperiment
object containing the output from runDEAnalysis
function
The specific analysis to visualize, used as analysisName
argument when running differential expression.
Specify an embedding for visualizing the relation ship between the conditions.
The feature ID type to use for displaying. Should
exists as a variable name of rowData
. Default NULL
use rownames
of inSCE
.
name of the generated file. If NULL
then the output
file name will be based on the name of the Rmarkdown template. Default
NULL
.
name of the output directory to save the rendered file. If
NULL
the file is stored to the current working directory.
Default NULL
.
Saves the HTML report in the specified output directory.