A function to generate .html Rmarkdown report containing the visualizations of the plotClusterAbundance function output
reportClusterAbundance(
inSCE,
cluster,
variable,
output_dir = ".",
output_file = "plotClusterAbundance_Report",
pdf = FALSE,
showSession = TRUE
)
A SingleCellExperiment
object.
A single character
, specifying the name to store the
cluster label in colData
.
A single character
, specifying the name to store the
phenotype labels in colData
.
name of the output directory to save the rendered file. If
NULL
the file is stored to the current working directory.
Default NULL
.
name of the generated file. If NULL
then the output
file name will be based on the name of the Rmarkdown template. Default
NULL
.
A logical
value indicating if a pdf should also be
generated for each figure in the report. Default is TRUE
.
A logical
value indicating if session information
should be displayed or not. Default is TRUE
.
An HTML file of the report will be generated at the path specified in the arguments.