A wrapper function which visualizes outputs from the
runBarcodeRankDrops
function stored in the metadata
slot of
the SingleCellExperiment object.
plotBarcodeRankDropsResults(
inSCE,
sample = NULL,
defaultTheme = TRUE,
dotSize = 0.5,
titleSize = 18,
axisSize = 15,
axisLabelSize = 18,
legendSize = 15
)
Input SingleCellExperiment object with saved
dimension reduction components or a variable with saved results from
runBarcodeRankDrops
. Required.
Character vector or colData variable name. Indicates which
sample each cell belongs to. Default NULL
.
Removes grid in plot and sets axis title size to
10
when TRUE
. Default TRUE
.
Size of dots. Default 0.5
.
Size of title of plot. Default 18
.
Size of x/y-axis ticks. Default 15
.
Size of x/y-axis labels. Default 18
.
size of legend. Default 15
.
list of .ggplot objects
data(scExample, package = "singleCellTK")
sce <- runBarcodeRankDrops(inSCE = sce)
#> Sat Mar 18 10:28:19 2023 ... Running 'barcodeRanks'
plotBarcodeRankDropsResults(inSCE = sce)
#> $scatterBarcodeRank
#> Warning: Transformation introduced infinite values in continuous y-axis
#>