Generate HTAN manifest file for droplet and cell count data
generateMeta(
dropletSCE = NULL,
cellSCE = NULL,
samplename,
dir,
HTAN = TRUE,
dataType = c("Droplet", "Cell", "Both")
)
A SingleCellExperiment object containing droplet count matrix data
A SingleCellExperiment object containing cell count matrix data
The sample name of the SingleCellExperiment objects
The output directory of the SCTK QC pipeline.
Whether generates manifest file including HTAN specific ID (HTAN Biospecimen ID, HTAN parent file ID and HTAN patient ID). Default is TRUE.
Type of the input data. It can be one of "Droplet", "Cell" or "Both".
A SingleCellExperiment object which combines all objects in sceList. The colData is merged.