R/sctkQCUtils.R
generateHTANMeta.Rd
Generate HTAN manifest file for droplet and cell count data
generateHTANMeta(
dropletSCE = NULL,
cellSCE = NULL,
samplename,
htan_biospecimen_id,
dir,
dataType = c("Droplet", "Cell", "Both")
)
A SingleCellExperiment object containing droplet count matrix data
A SingleCellExperiment object containing cell count matrix data
The sample name of the SingleCellExperiment objects
The HTAN biospecimen id of the sample in SingleCellExperiment object
The output directory of the SCTK QC pipeline.
Type of the input data. It can be one of "Droplet", "Cell" or "Both".
A SingleCellExperiment object which combines all objects in sceList. The colData is merged.