SingleCellExperiment
object based upon the input parameters.R/sctkTagging.R
expTaggedData.Rd
expTaggedData
Returns a list of names of data items from the
input SingleCellExperiment
object based upon the input parameters.
expTaggedData(
inSCE,
tags = NULL,
redDims = FALSE,
recommended = NULL,
showTags = TRUE
)
Input SingleCellExperiment
object.
A character()
value indicating if the data items should
be returned separated by the specified tags. Default is NULL
indicating that returned names of the data items are simply returned as a
list with default tag as "uncategorized".
A logical
value indicating if reducedDims
should be returned as well separated with 'redDims' tag.
A character()
vector indicating the tags that
should be displayed as recommended. Default is NULL
.
A logical
value indicating if the tags should be
shown. If FALSE
, output is just a simple list, not separated by tags.
A list
of names of data items specified by the other
parameters.
data(scExample, package = "singleCellTK")
sce <- expSetDataTag(sce, "raw", "counts")
tags <- expTaggedData(sce)