Creates a table of summary metrics from an input SingleCellExperiment
summarizeSCE(inSCE, useAssay = NULL, sampleVariableName = NULL)
Input SingleCellExperiment object.
Indicate which assay to summarize. If NULL
, then the
first assay in inSCE
will be used. Default NULL
.
Variable name in colData
denoting which
sample each cell belongs to. If NULL
, all cells will be assumed
to come from the same sample. Default "sample"
.
A data.frame object of summary metrics.
data("mouseBrainSubsetSCE")
summarizeSCE(mouseBrainSubsetSCE, sample = NULL)
#> Sample Number of Cells Mean counts per cell Median counts per cell
#> 1 Sample 30 5969 4758
#> Mean features detected per cell Median features detected per cell
#> 1 1107 1085