Get runDEAnalysis .html report

A function to generate .html Rmarkdown report containing the visualizations of the runDEAnalysis function output

reportDiffExp(inSCE, study, output_file = NULL, output_dir = NULL)

Arguments

inSCE

A SingleCellExperiment object containing the output from runDEAnalysis function

study

The specific analysis to visualize, used as analysisName argument when running differential expression.

output_file

name of the generated file. If NULL then the output file name will be based on the name of the Rmarkdown template. Default NULL.

output_dir

name of the output directory to save the rendered file. If NULL the file is stored to the current working directory. Default NULL.

Value

Saves the HTML report in the specified output directory.