Plot mean feature value in each batch of a SingleCellExperiment object

plotSCEBatchFeatureMean(
  inSCE,
  useAssay = NULL,
  useReddim = NULL,
  useAltExp = NULL,
  batch = "batch",
  xlab = "batch",
  ylab = "Feature Mean",
  ...
)

Arguments

inSCE: SingleCellExperiment inherited object.
useAssay: A single character. The name of the assay that stores the value to plot. For useReddim and useAltExp also. Default NULL.
useReddim: A single character. The name of the dimension reduced matrix that stores the value to plot. Default NULL.
useAltExp: A single character. The name of the alternative experiment that stores an assay of the value to plot. Default NULL.
batch: A single character. The name of batch annotation column in colData(inSCE). Default "batch".
xlab: label for x-axis. Default "batch".
ylab: label for y-axis. Default "Feature Mean".
...: Additional arguments passed to .ggViolin.

Value

ggplot

Examples

data('sceBatches', package = 'singleCellTK')
plotSCEBatchFeatureMean(sceBatches, useAssay = "counts")