Get/Set diffAbundanceFET result table

Get/Set diffAbundanceFET result table

getDiffAbundanceResults(x, analysisName)

# S4 method for SingleCellExperiment
getDiffAbundanceResults(x, analysisName)

getDiffAbundanceResults(x, analysisName) <- value

# S4 method for SingleCellExperiment
getDiffAbundanceResults(x, analysisName) <- value

Arguments

x

A SingleCellExperiment object.

analysisName

A single character string specifying an analysis performed with diffAbundanceFET

value

The output table of diffAbundanceFET

Value

The differential abundance table for getter method, or update the SCE object with new result for setter method.

Examples

data("mouseBrainSubsetSCE", package = "singleCellTK")
mouseBrainSubsetSCE <- diffAbundanceFET(inSCE = mouseBrainSubsetSCE,
                                                cluster = "tissue",
                                                variable = "level1class",
                                                case = "oligodendrocytes",
                                                control = "microglia",
                                                analysisName = "diffAbund")
result <- getDiffAbundanceResults(mouseBrainSubsetSCE, "diffAbund")