Export a SingleCellExperiment object to flat text files — exportSCEtoFlatFile • singleCellTK

Writes all assays, colData, rowData, reducedDims, and altExps objects in a SingleCellExperiment to text files. The items in the 'metadata' slot remain stored in list and are saved in an RDS file.

exportSCEtoFlatFile(
  sce,
  outputDir = "./",
  overwrite = TRUE,
  gzipped = TRUE,
  prefix = "SCE"
)

Arguments

sce: SingleCellExperiment object to be exported.
outputDir: Name of the directory to store the exported file(s).
overwrite: Boolean. Whether to overwrite the output files. Default TRUE.
gzipped: Boolean. TRUE if the output files are to be gzip compressed. FALSE otherwise. Default TRUE.
prefix: Prefix of file names.

Value

Generates text files containing data from inSCE.

Examples

data(sce_chcl, package = "scds")
if (FALSE) {
exportSCEtoFlatFile(sce_chcl, "sce_chcl")
}