expData Store data items using tags to identify the type of data item stored. To be used as a replacement for assay<- setter function but with additional parameter to set a tag to a data item. — expData<-,ANY,character,CharacterOrNullOrMissing,logical-method • singleCellTK

expData Store data items using tags to identify the type of data item stored. To be used as a replacement for assay<- setter function but with additional parameter to set a tag to a data item.

# S4 method for ANY,character,CharacterOrNullOrMissing,logical
expData(inSCE, assayName, tag = NULL, altExp = FALSE) <- value

Arguments

inSCE: Input SingleCellExperiment object.
assayName: Specify the name of the input assay.
tag: Specify the tag to store against the input assay. Default is NULL, which will set the tag to "uncategorized".
altExp: A logical value indicating if the input assay is a altExp or a subset assay.
value: An input matrix-like value to store in the SCE object.

Value

A SingleCellExperiment object containing the newly stored data.

Examples

data(scExample, package = "singleCellTK")
mat <- expData(sce, "counts")
expData(sce, "counts", tag = "raw") <- mat