seuratScaleData Scales the input sce object according to the input parameters

seuratScaleData(
  inSCE,
  useAssay = "seuratNormData",
  scaledAssayName = "seuratScaledData",
  model = "linear",
  scale = TRUE,
  center = TRUE,
  scaleMax = 10,
  verbose = TRUE
)

Arguments

inSCE	(sce) object to scale
useAssay	Assay containing normalized counts to scale.
scaledAssayName	Name of new assay containing scaled data. Default `seuratScaledData`.
model	selected model to use for scaling data. Default `"linear"`.
scale	boolean if data should be scaled or not. Default `TRUE`.
center	boolean if data should be centered or not. Default `TRUE`
scaleMax	maximum numeric value to return for scaled data. Default `10`.
verbose	Logical value indicating if informative messages should be displayed. Default is `TRUE`.

Value

Scaled SingleCellExperiment object

Examples

data(scExample, package = "singleCellTK")
if (FALSE) {
sce <- seuratNormalizeData(sce, useAssay = "counts")
sce <- seuratFindHVG(sce, useAssay = "counts")
sce <- seuratScaleData(sce, useAssay = "counts")
}