scranModelGeneVar Generates and stores variability data from scran::modelGeneVar in the input singleCellExperiment object

Source: R/scran_modelGeneVar.R

scranModelGeneVar Generates and stores variability data from scran::modelGeneVar in the input singleCellExperiment object

scranModelGeneVar(inSCE, assayName)

Arguments

inSCE

a singleCellExperiment object
assayName

selected assay to compute variable features from

Value

inSCE updated singleCellExperiment object that contains variable feature metrics in rowData

Author

Irzam Sarfraz

Examples

data(sce_chcl, package = "scds")
sce_chcl <- scranModelGeneVar(sce_chcl, "counts")

#> Warning: collapsing to unique 'x' values