scaterlogNormCounts Uses logNormCounts to log normalize input data

Source: R/scater_logNormCounts.R

scaterlogNormCounts Uses logNormCounts to log normalize input data

scaterlogNormCounts(
  inSCE,
  assayName = "ScaterLogNormCounts",
  useAssay = "counts"
)

Arguments

inSCE

Input SingleCellExperiment object
assayName

New assay name for log normalized data
useAssay

Input assay

Value

inSCE Updated SingleCellExperiment object that contains the new log normalized data

Author

Irzam Sarfraz

Examples

data(sce_chcl, package = "scds")
sce_chcl <- scaterlogNormCounts(sce_chcl,"logcounts", "counts")