Plot mean feature value in each batch of a SingleCellExperiment object

plotSCEBatchFeatureMean(
  inSCE,
  useAssay = NULL,
  useReddim = NULL,
  useAltExp = NULL,
  batch = "batch",
  xlab = "batch",
  ylab = "Feature Mean",
  ...
)

Arguments

inSCE	SingleCellExperiment inherited object.
useAssay	A single character. The name of the assay that stores the value to plot. For `useReddim` and `useAltExp` also. Default `NULL`.
useReddim	A single character. The name of the dimension reduced matrix that stores the value to plot. Default `NULL`.
useAltExp	A single character. The name of the alternative experiment that stores an assay of the value to plot. Default `NULL`.
batch	A single character. The name of batch annotation column in `colData(inSCE)`. Default `"batch"`.
xlab	label for x-axis. Default `"batch"`.
ylab	label for y-axis. Default `"Feature Mean"`.
...	Additional arguments passed to `.ggViolin`.

Value

ggplot

Examples

data('sceBatches', package = 'singleCellTK')
plotSCEBatchFeatureMean(sceBatches, useAssay = "counts")