Used to peform subsetting of a
SingleCellExperiment object using a variety of methods that
indicate the correct rows to keep. The various methods,
index
, bool
, and rowData
, can be used in conjunction
with one another. If returnAsAltExp
is set to TRUE
,
then the returned object will have the same number of rows as the input
inSCE
as the subsetted object will be stored in the
altExp
slot.
subsetSCERows( inSCE, index = NULL, bool = NULL, rowData = NULL, returnAsAltExp = TRUE, altExpName = "subset", prependAltExpName = TRUE )
inSCE | Input SingleCellExperiment object. |
---|---|
index | Integer vector. Vector of indicies indicating which rows
to keep. If |
bool | Boolean vector. Vector of |
rowData | Character. An expression that will identify a subset of rows
using variables found in the |
returnAsAltExp | Boolean. If |
altExpName | Character. Name of the alternative experiment object to
add if |
prependAltExpName | Boolean. If |
A SingleCellExperiment object that has been subsetted by rowData.
Joshua D. Campbell