R/seuratFunctions.R
seuratSCTransform.Rd
seuratSCTransform Runs the SCTransform function to transform/normalize the input data
seuratSCTransform( inSCE, normAssayName = "SCTCounts", useAssay = "counts", verbose = TRUE )
inSCE | Input SingleCellExperiment object |
---|---|
normAssayName | Name for the output data assay. Default
|
useAssay | Name for the input data assay. Default |
verbose | Logical value indicating if informative messages should
be displayed. Default is |
Updated SingleCellExperiment object containing the transformed data
data("mouseBrainSubsetSCE", package = "singleCellTK") mouseBrainSubsetSCE <- seuratSCTransform(mouseBrainSubsetSCE)#>#>#>#>#>#> | | | 0% | |================== | 25% | |=================================== | 50% | |==================================================== | 75% | |======================================================================| 100%#>#> | | | 0% | |============== | 20% | |============================ | 40% | |========================================== | 60% | |======================================================== | 80% | |======================================================================| 100%#>#>#>#>#>