Compute and plot visualizations for marker genes
seuratGenePlot( inSCE, scaledAssayName = "seuratScaledData", plotType, features, groupVariable, splitBy = NULL, cols = c("lightgrey", "blue"), ncol = 1 )
inSCE | Input |
---|---|
scaledAssayName | Specify the name of the scaled assay stored in the input object. |
plotType | Specify the type of the plot to compute. Options are limited to "ridge", "violing", "feature", "dot" and "heatmap". |
features | Specify the features to compute the plot against. |
groupVariable | Specify the column name from the colData slot that should be used as grouping variable. |
splitBy | Specify the column name from the colData slot that should be
used to split samples.
Default is |
cols | Specify two colors to form a gradient between. Default is
|
ncol | Visualizations will be adjusted in "ncol" number of columns.
Default is |
Plot object