A function to generate .html Rmarkdown report containing the visualizations of the runDropletQC function output
reportDropletQC( inSCE, output_file = NULL, output_dir = NULL, subTitle = NULL, studyDesign = NULL )
inSCE | A SingleCellExperiment object containing the full droplet count matrix with the output from runDropletQC function |
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output_file | name of the generated file. If NULL/default then the output file name will be based on the name of the Rmarkdown template |
output_dir | name of the output directory to save the rendered file. If NULL/default the file is stored to the current working directory |
subTitle | subtitle of the QC HTML report. Default is NULL. |
studyDesign | description of the data set and experiment design. It would be shown at the top of QC HTML report. Default is NULL. |
.html file
data(scExample, package = "singleCellTK") if (FALSE) { sce <- runDropletQC(sce) reportDropletQC(inSCE = sce) }