Calculate and produce a list of thresholded counts (on natural scale),
thresholds, bins, densities estimated on each bin, and the original data from
thresholdSCRNACountMatrix
plotMASTThresholdGenes( inSCE, useAssay = "logcounts", doPlot = TRUE, isLogged = TRUE, check_sanity = TRUE )
inSCE | SingleCellExperiment object |
---|---|
useAssay | character, default |
doPlot | Logical scalar. Whether to directly plot in the plotting area.
If |
isLogged | Logical scalar. Whether the assay used for the analysis is
logged. If not, will do a |
check_sanity | Logical scalar. Whether to perform MAST's sanity check
to see if the counts are logged. Default |
Plot the thresholding onto the plotting region if plot == TRUE
or a graphical object if plot == FALSE
.
#>#>#>#> Warning: calling par(new=TRUE) with no plot