R/plotDimRed.R
plotDimRed.Rd
Plot dimensionality reduction from computed metrics including PCA, ICA, tSNE and UMAP
plotDimRed( inSCE, useReduction, showLegend = FALSE, xDim = 1, yDim = 2, xAxisLabel = NULL, yAxisLabel = NULL )
inSCE | Input SCE object |
---|---|
useReduction | Reduction to plot |
showLegend | If legends should be plotted or not |
xDim | Numeric value indicating the dimension to use for X-axis. Default is 1 (refers to PC1). |
yDim | Numeric value indicating the dimension to use for Y-axis. Default is 2 (refers to PC2). |
xAxisLabel | Specify the label for x-axis. Default is |
yAxisLabel | Specify the label for y-axis. Default is |
plot object
data("mouseBrainSubsetSCE", package = "singleCellTK") plotDimRed(mouseBrainSubsetSCE, "PCA_logcounts")