A plotting function which visualizes outputs from the runBarcodeRankDrops function stored in the colData slot of the SingleCellExperiment object via scatterplot.
plotBarcodeRankScatter( inSCE, sample = NULL, defaultTheme = TRUE, dotSize = 0.5, title = NULL, titleSize = 18, xlab = NULL, ylab = NULL, axisSize = 12, axisLabelSize = 15, legendSize = 10, combinePlot = "none", sampleRelHeights = 1, sampleRelWidths = 1 )
inSCE | Input SingleCellExperiment object with saved dimension reduction components or a variable with saved results from runBarcodeRankDrops. Required. |
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sample | Character vector. Indicates which sample each cell belongs to. Default NULL. |
defaultTheme | Removes grid in plot and sets axis title size to 10 when TRUE. Default TRUE. |
dotSize | Size of dots. Default 0.5. |
title | Title of plot. Default NULL. |
titleSize | Size of title of plot. Default 18. |
xlab | Character vector. Label for x-axis. Default NULL. |
ylab | Character vector. Label for y-axis. Default NULL. |
axisSize | Size of x/y-axis ticks. Default 12. |
axisLabelSize | Size of x/y-axis labels. Default 15. |
legendSize | size of legend. Default 10. |
combinePlot | Boolean. If multiple plots are generated (multiple samples, etc.), will combined plots using `cowplot::plot_grid`. |
sampleRelHeights | If there are multiple samples and combining by "all", the relative heights for each plot. |
sampleRelWidths | If there are multiple samples and combining by "all", the relative widths for each plot. Default TRUE. |
a ggplot object of the scatter plot.
#>plotBarcodeRankScatter(inSCE=sce)#> Warning: Transformation introduced infinite values in continuous y-axis