A wrapper function which visualizes outputs from the runEmptyDrops function stored in the colData slot of the SingleCellExperiment object via plots.
plotBarcodeRankDropsResults( inSCE, sample = NULL, defaultTheme = TRUE, dotSize = 0.5, titleSize = 18, axisLabelSize = 18, axisSize = 15, legendSize = 15 )
inSCE | Input SingleCellExperiment object with saved dimension reduction components or a variable with saved results from runBarcodeRankDrops. Required. |
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sample | Character vector. Indicates which sample each cell belongs to. Default NULL. |
defaultTheme | Removes grid in plot and sets axis title size to 10 when TRUE. Default TRUE. |
dotSize | Size of dots. Default 0.5. |
titleSize | Size of title of plot. Default 18. |
axisLabelSize | Size of x/y-axis labels. Default 18. |
axisSize | Size of x/y-axis ticks. Default 15. |
legendSize | size of legend. Default 15. |
list of .ggplot objects
#>plotBarcodeRankDropsResults(inSCE=sce)#> $scatterBarcodeRank#> Warning: Transformation introduced infinite values in continuous y-axis#>