Retrieves published example datasets stored in SingleCellExperiment using the scRNAseq and TENxPBMCData packages. See 'Details' for a list of available datasets.
importExampleData(dataset, class = c("Matrix", "matrix"), delayedArray = FALSE)
dataset | Character. Name of the dataset to retrieve. |
---|---|
class | Character. The class of the expression matrix stored in the SCE
object. Can be one of |
delayedArray | Boolean. Whether to read the expression matrix as
DelayedArray object or not. Default |
The specified SingleCellExperiment object.
See the list below for the available datasets and their descriptions.
Retrieved with
ReprocessedFluidigmData
. Returns a dataset of 65
human neural cells from Pollen et al. (2014), each sequenced at high and low
coverage (SRA accession SRP041736).
Retrieved with
ReprocessedAllenData
. Returns a dataset of 379 mouse
brain cells from Tasic et al. (2016).
Retrieved with TENxPBMCData
.
2,700 peripheral blood mononuclear cells (PBMCs) from 10X Genomics.
Retrieved with TENxPBMCData
.
4,340 peripheral blood mononuclear cells (PBMCs) from 10X Genomics.
Retrieved with TENxPBMCData
.
5,419 peripheral blood mononuclear cells (PBMCs) from 10X Genomics.
Retrieved with TENxPBMCData
.
8,381 peripheral blood mononuclear cells (PBMCs) from 10X Genomics.
Retrieved with TENxPBMCData
.
33,148 peripheral blood mononuclear cells (PBMCs) from 10X Genomics.
Retrieved with TENxPBMCData
.
68,579 peripheral blood mononuclear cells (PBMCs) from 10X Genomics.
Joshua D. Campbell, David Jenkins
sce <- importExampleData("pbmc3k")#>#>#>