Export data in Seurat object
exportSCEToSeurat( inSCE, prefix = "sample", outputDir = "./", overwrite = TRUE, copyColData = TRUE, copyReducedDim = TRUE, copyDecontX = TRUE )
inSCE | A SingleCellExperiment object that contains the data. QC metrics are stored in colData of the singleCellExperiment object. |
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prefix | Prefix to use for the name of the output file. Default |
outputDir | Path to the directory where outputs will be written. Default is the current working directory. |
overwrite | Boolean. Whether overwrite the output if it already exists in the outputDir. Default |
copyColData | Boolean. Whether copy 'colData' of SCE object to the 'meta.data' of Seurat object. Default |
copyReducedDim | Boolean. Whether copy 'reducedDims' of the SCE object to the 'reductions' of Seurat object. Default |
copyDecontX | Boolean. Whether copy 'decontXcounts' assay of the SCE object to the 'assays' of Seurat object. Default |
Generates a Seurat object containing data from inSCE
.