Export data in SingleCellExperiment object
exportSCE( inSCE, samplename = "sample", directory = "./", type = "Cells", format = c("SCE", "AnnData", "FlatFile", "HTAN", "Seurat") )
inSCE | A SingleCellExperiment object that contains the data. QC metrics are stored in colData of the singleCellExperiment object. |
---|---|
samplename | Sample name. This will be used as name of subdirectories and the prefix of flat file output. Default is 'sample'. |
directory | Output directory. Default is './'. |
type | Type of data. The type of data stored in SingleCellExperiment object. It can be 'Droplets'(raw droplets matrix) or 'Cells' (cells matrix). |
format | The format of output. It currently supports flat files, rds files and python h5 files. It can output multiple formats. Default: c("SCE", "AnnData", "FlatFile", "HTAN"). |
Generates a file containing data from inSCE
, in specified format
.