Trims an input count matrix such that each value greater than a
threshold value and each value less than a provided
lower threshold value is trimmed to the lower treshold value.
trimCounts(counts, trimValue = c(10, -10))
Arguments
- counts
matrix
- trimValue
where trimValue[1] for upper threshold and trimValue[2] as
lower threshold. Default is c(10,-10)
Value
trimmed counts matrix
Examples
data(sce_chcl, package = "scds")
assay(sce_chcl, "countsTrimmed") <- trimCounts(assay(sce_chcl, "counts"),
c(10, -10))