Run the single cell analysis app

Use this function to run the single cell analysis app.

singleCellTK(inSCE = NULL, includeVersion = TRUE, theme = "yeti")

Arguments

inSCE

Input SingleCellExperiment object.

includeVersion

Include the version number in the SCTK header. The default is TRUE.

theme

The bootswatch theme to use for the singleCellTK UI. The default is 'flatly'.

Value

The shiny app will open

Examples

if (FALSE) { # \dontrun{
#Upload data through the app
singleCellTK()

# Load the app with a SingleCellExperiment object
data("mouseBrainSubsetSCE")
singleCellTK(mouseBrainSubsetSCE)
} # }