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singleCellTK
2.18.0
Installation
Tutorials
Importing and QC - PBMC3K
A La Carte Workflow - PBMC3K
Seurat Curated Workflow - PBMC3K
Celda Curated Workflow - PBMC3K
Scanpy Curated Workflow - PBMC3K
SCTK-QC
Documentation
Data
Import Data
Import Gene Sets
Annotation
Export Data
Delete Data
QC & Filtering
Droplet QC (R console)
Cell QC (R console)
Cell QC (Shiny UI)
Filtering
Normalization & Batch Correction
Normalization
Batch Correction
Feature Selection & Dimensionality Reduction
Feature Selection
Dimensionality Reduction
2D Embedding
Clustering
Differential Expression & Cell Type Labeling
Differential Expression
Find Marker
Cell Type Labeling
Pathway & Enrichment Analysis
EnrichR
Pathway Analysis
Trajectory Analysis
TSCAN
Curated Workflows
Seurat
Celda
Visualization
General Visualization
Generic Heatmap
Web Application
FAQs
Reference
NEWS
License
YEAR: 2016 COPYRIGHT HOLDER: David Jenkins, W. Evan Johnson, and Joshua D. Campbell
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