Compare a result object to COSMIC V2 SBS Signatures (combination whole-exome and whole-genome)

compare_cosmic_v2(
  result,
  threshold = 0.9,
  metric = "cosine",
  result_name = deparse(substitute(result)),
  decimals = 2,
  same_scale = FALSE
)

Arguments

result: A musica_result object.
threshold: threshold for similarity
metric: One of "cosine" for cosine similarity or "jsd" for 1 minus the Jensen-Shannon Divergence. Default "cosine".
result_name: title for plot user result signatures
decimals: Specifies rounding for similarity metric displayed. Default 2.
same_scale: If TRUE, the scale of the probability for each signature will be the same. If FALSE, then the scale of the y-axis will be adjusted for each signature. Default TRUE.

Value

Returns the comparisons

Examples

data(res)
compare_cosmic_v2(res, threshold = 0.7)

#>      cosine x_sig_index y_sig_index x_sig_name  y_sig_name
#> 4 0.9742418           3           7 Signature3  Signature7
#> 5 0.7730161           3          11 Signature3 Signature11
#> 6 0.7568463           3          30 Signature3 Signature30
#> 1 0.7337470           1          13 Signature1 Signature13
#> 2 0.7296889           2           5 Signature2  Signature5
#> 3 0.7107142           2          19 Signature2 Signature19